biopal.dataset_query.dataset_query.dataset_query

class biopal.dataset_query.dataset_query.dataset_query

Query over input dataSet

Performs a query on the BioPAL input dataSet: the query rule is specified into the input file “dataset_query” section to get stacks from a specified geographical and temporal region. Writes in output an updated input file, filled with new section “stack_based_processing”

Examples

To ececute it, use its run method after initialization:

>>> from biopal.dataset_query.dataset_query import dataset_query
>>> dq_obj = dataset_query()
>>> input_file_up = dq_obj.run( input_file )

• input_file: path of the input file containing “dataset_query” section

• input_file_up: path of the input file, updated with “stack_based_processing” section

Methods

run( input_file_path )	run the dataSet query
name	(str) name of the APP

__init__()

Methods

__init__()
name()
run(input_file_xml)