biopal.tomo_fh.main_TOMO_FH.CoreProcessingTOMOFH#

class biopal.tomo_fh.main_TOMO_FH.CoreProcessingTOMOFH(configuration_file)#

CoreProcessingTOMOFH APP

CoreProcessingTOMOFH APP is the second of the two sub-APPs called by TomoForestHeight processor.

It performs merging ascending with descending processed stacks and mosaiking together differtent processed tiles of the output grid

See also

biopal.dataset_query.dataset_query.dataset_query

it’s the first APP to be called in the manual sequence

StackBasedProcessingTOMOFH

it’s the APP which prepares the input for this APP

Examples

Manual TOMO FH chain execution

>>> from biopal.dataset_query.dataset_query import dataset_query
>>> from biopal.tomo_fh.main_TOMO_FH import StackBasedProcessingTOMOFH
>>> dq_obj = dataset_query()
>>> input_file_up1 = dq_obj.run( input_file )
>>> sbp_obj = StackBasedProcessingTOMOFH( config_file )
>>> input_file_up2 = sbp_obj.run( input_file_up1 )
>>> fhcp_obj = CoreProcessingTOMOFH( config_file )
>>> fhcp_obj.run( input_file_up2 )

  • input_file: path of the BioPAL input file

  • input_file_up1: same of input_file with also the “stack_based_processing” section

  • input_file_up2: same of input_file_up1 with also the “core_processing_tomo_fh” section

  • config_file: path of the BioPAL configuration file

Attributes:
configuration_filestr

path of the Configuration_File.xml file

Methods

run( input_file_path )

run the CoreProcessingTOMOFH APP

name

(str) name of the APP
__init__(configuration_file)#

Methods

__init__(configuration_file)

name()

run(input_file_xml)