biopal.fh.main_FH.StackBasedProcessingFH#
- class biopal.fh.main_FH.StackBasedProcessingFH(configuration_file)#
StackBasedProcessingFH APP
StackBasedProcessingFH APP is the first of the two sub-APPs called by ForestHeight processor.
It performs the stack-based forest height estimation.
See also
biopal.dataset_query.dataset_query.dataset_query
it’s the first APP to be called in the manual sequence
CoreProcessingFH
it’s the core APP that follows this APP in the call sequence
Examples
Manual FH chain execution
>>> from biopal.dataset_query.dataset_query import dataset_query >>> from biopal.fh.main_FH import StackBasedProcessingFH >>> dq_obj = dataset_query() >>> input_file_up1 = dq_obj.run( input_file ) >>> sbp_obj = StackBasedProcessingFH( config_file ) >>> input_file_up2 = sbp_obj.run( input_file_up1 ) >>> fhcp_obj = CoreProcessingFH( config_file ) >>> fhcp_obj.run( input_file_up2 )
input_file: path of the BioPAL input file
input_file_up1: same of input_file with also the “stack_based_processing” section
input_file_up2: same of input_file_up1 with also the “core_processing_fh” section
config_file: path of the BioPAL configuration file
- Attributes:
- configuration_filestr
path of the Configuration_File.xml file
Methods
run( input_file_path )
run the StackBasedProcessingFH APP
name
(str) name of the APP
- __init__(configuration_file)#
Methods
__init__
(configuration_file)name
()run
(input_file_xml)