biopal.tomo_fh.main_TOMO_FH.StackBasedProcessingTOMOFH#

class biopal.tomo_fh.main_TOMO_FH.StackBasedProcessingTOMOFH(configuration_file)#

StackBasedProcessingTOMOFH APP

StackBasedProcessingTOMOFH APP is the first of the two sub-APPs called by TomoForestHeight processor.

It performs the stack-based tomographic forest height estimation.

See also

biopal.dataset_query.dataset_query.dataset_query

it’s the first APP to be called in the manual sequence

CoreProcessingTOMOFH

it’s the core APP that follows this APP in the call sequence

Examples

Manual TOMO FH chain execution

>>> from biopal.dataset_query.dataset_query import dataset_query
>>> from biopal.tomo_fh.main_TOMO_FH import StackBasedProcessingTOMOFH
>>> dq_obj = dataset_query()
>>> input_file_up1 = dq_obj.run( input_file )
>>> sbp_obj = StackBasedProcessingTOMOFH( config_file )
>>> input_file_up2 = sbp_obj.run( input_file_up1 )
>>> fhcp_obj = CoreProcessingTOMOFH( config_file )
>>> fhcp_obj.run( input_file_up2 )

  • input_file: path of the BioPAL input file

  • input_file_up1: same of input_file with also the “stack_based_processing” section

  • input_file_up2: same of input_file_up1 with also the “core_processing_tomo_fh” section

  • config_file: path of the BioPAL configuration file

Attributes:
configuration_filestr

path of the Configuration_File.xml file

Methods

run( input_file_path )

run the StackBasedProcessingFH APP

name

(str) name of the APP
__init__(configuration_file)#

Methods

__init__(configuration_file)

name()

run(input_file_xml)