biopal.fh.main_FH.ForestHeight

class biopal.fh.main_FH.ForestHeight(configuration_file)

FH main APP ForestHeight”

run this APP to execute the complete Forest Height estimation processing chain.

ForestHeight is composed by two sub APPS automatically called in sequence when standard launch is performed: StackBasedProcessingFH -> CoreProcessingFH

Refer to dataset_query, StackBasedProcessingFH and CoreProcessingFH documentation for step by step run.

See also

biopal.dataset_query.dataset_query.dataset_query

it’s the APP to be called before this APP

StackBasedProcessingFH

it’s the first of the two sub-APPs called by ForestHeight preocessor

CoreProcessingFH

it’s the second of the two sub-APPs called by ForestHeight processor

Examples

Manual FH chain execution

>>> from biopal.dataset_query.dataset_query import dataset_query
>>> from biopal.fh.main_FH import ForestHeight
>>> dq_obj = dataset_query()
>>> input_file_up = dq_obj.run( input_file )
>>> chain_obj = ForestHeight( configuration_file )
>>> chain_obj.run( input_file_up )

• input_file: path of the BioPAL input file

• input_file_up: same of input_file with also the “stack_based_processing” section

• configuration_file: path of the BioPAL configuration file

Attributes:

configuration_filestr

path of the Configuration_File.xml file

Methods

run( input_file_path )	run the ForestHeight processing
name	(str) name of the APP

__init__(configuration_file)

Methods

__init__(configuration_file)
name()
run(input_file_xml)