biopal.tomo_fh.main_TOMO_FH.TomoForestHeight#

class biopal.tomo_fh.main_TOMO_FH.TomoForestHeight(configuration_file)#

TOMO FH main APP TomoForestHeight

run this APP to execute the complete Tomographic Forest Height estimation processing chain.

TomoForestHeight is composed by two sub APPS automatically called in sequence when standard launch is performed: StackBasedProcessingTOMOFH -> CoreProcessingTOMOFH

Refer to dataset_query, StackBasedProcessingTOMOFH and CoreProcessingTOMOFH documentation for step by step run.

See also

biopal.dataset_query.dataset_query.dataset_query

it’s the APP to be called before this APP

StackBasedProcessingTOMOFH

it’s the first of the two sub-APPs called by TomoForestHeight preocessor

CoreProcessingTOMOFH

it’s the second of the two sub-APPs called by TomoForestHeight processor

Examples

Manual TOMO FH chain execution

>>> from biopal.dataset_query.dataset_query import dataset_query
>>> from biopal.tomo_fh.main_TOMO_FH import TomoForestHeight
>>> dq_obj = dataset_query()
>>> input_file_up = dq_obj.run( input_file )
>>> chain_obj = TomoForestHeight( configuration_file )
>>> chain_obj.run( input_file_up )

  • input_file: path of the BioPAL input file

  • input_file_up: same of input_file with also the “stack_based_processing” section

  • configuration_file: path of the BioPAL configuration file

Attributes:
configuration_filestr

path of the Configuration_File.xml file

Methods

run( input_file_path )

run the TomoForestHeight processing

name

(str) name of the APP
__init__(configuration_file)#

Methods

__init__(configuration_file)

name()

run(input_file_xml)